Journal of Tuberculosis and Lung Disease ›› 2021, Vol. 2 ›› Issue (2): 98-101.doi: 10.3969/j.issn.2096-8493.2021.02.002
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Received:
2021-02-10
Online:
2021-06-30
Published:
2021-07-01
Contact:
WANG Gui-rong
E-mail:wangguirong1230@ccmu.edu.cn
LIAO Xin-lei, WANG Gui-rong. Recent advances in molecular diagnostics of nontuberculous mycobacterial diseases[J]. Journal of Tuberculosis and Lung Disease , 2021, 2(2): 98-101. doi: 10.3969/j.issn.2096-8493.2021.02.002
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[1] |
中华医学会结核病学分会. 非结核分枝杆菌病诊断与治疗指南(2020年版). 中华结核和呼吸杂志, 2020,43(11):918-946. doi: 10.3760/cma.j.cn112147-20200508-00570.
doi: 10.3760/cma.j.cn112147-20200508-00570 |
[2] |
Daley CL, Iaccarino JM, Lange C, et al. Treatment of nontuberculous mycobacterial pulmonary disease: an official ATS/ERS/ESCMID/IDSA clinical practice guideline. Eur Respir J, 2020,56(1):200053. doi: 10.1093/cid/ciaa1125.
doi: 10.1093/cid/ciaa1125 |
[3] |
Ratnatunga CN, Lutzky VP, Kupz A, et al. The Rise of Non-Tuberculosis Mycobacterial Lung Disease. Front Immunol, 2020,11:303. doi: 10.3389/fimmu.2020.00303.
doi: 10.3389/fimmu.2020.00303 pmid: 32194556 |
[4] |
Scoleri GP, Choo JM, Leong LE, et al. Culture-Independent Detection of Nontuberculous Mycobacteria in Clinical Respiratory Samples. J Clin Microbiol, 2016,54(9):2395-2398. doi: 10.1128/JCM.01410-16.
doi: 10.1128/JCM.01410-16 URL |
[5] |
Jung YJ, Kim JY, Song DJ, et al. Evaluation of three real-time PCR assays for differential identification of Mycobacterium tuberculosis complex and nontuberculous mycobacteria species in liquid culture media. Diagn Microbiol Infect Dis, 2016,85(2):186-191. doi: 10.1016/j.diagmicrobio.2016.03.014.
doi: 10.1016/j.diagmicrobio.2016.03.014 URL |
[6] |
Cho SY, Kim MJ, Suh JT, et al. Comparison of diagnostic performance of three real-time PCR kits for detecting Mycobacterium species. Yonsei Med J, 2011,52(2):301-306. doi: 10.3349/ymj.2011.52.2.301.
doi: 10.3349/ymj.2011.52.2.301 URL |
[7] |
Kim YJ, Park MY, Kim SY, et al. Evaluation of the perfor-mances of advanSure TB/NTM real time PCR Kit for detection of mycobacteria in respiratory specimens. Korean J Lab Med, 2008,28:33-38. doi: 10.3343/kjlm.2008.28.1.34.
doi: 10.3343/kjlm.2008.28.1.34 |
[8] |
Guglielmetti L, Mougari F, Lopes A, et al. Human infections due to nontuberculous mycobacteria: the infectious diseases and clinical microbiology specialists’ point of view. Future Microbiol, 2015,10(9):1467-1483. doi: 10.2217/fmb.15.64.
doi: 10.2217/fmb.15.64 pmid: 26344005 |
[9] |
Lebrun L, Espinasse F, Poveda JD, et al. Evaluation of nonradioactive DNA probes for identification of mycobacteria. J Clin Microbiol, 1992,30(9):2476-8. doi: 10.1128/JCM.30.9.2476-2478.1992.
doi: 10.1128/JCM.30.9.2476-2478.1992 pmid: 1401020 |
[10] |
Kim SH, Shin JH. Identification of Nontuberculous Mycobacteria from Clinical Isolates and Specimens using AdvanSure Mycobacteria GenoBlot Assay. Jpn J Infect Dis, 2020,73(4):278-281. doi: 10.7883/yoken.JJID.2019.111.
doi: 10.7883/yoken.JJID.2019.111 URL |
[11] |
Ahmad S, Mokaddas E. Diversity of Nontuberculous Mycobacteria in Kuwait: Rapid Identification and Differentiation of Mycobacterium Species by Multiplex PCR, INNO-LiPA Mycobacteria v2 Assay and PCR Sequencing of rDNA. Med Princ Pract, 2019,28(3):208-215. doi: 10.1159/000498910.
doi: 10.1159/000498910 URL |
[12] |
Costa-Alcalde JJ, Barbeito-Castiñeiras G, González-Alba JM, et al. Comparative evaluation of the identification of rapidly growing non-tuberculous mycobacteria by mass spectrometry (MALDI-TOF MS), GenoType Mycobacterium CM/AS assay and partial sequencing of the rpoβ gene with phylogenetic analysis as a reference method. Enferm Infecc Microbiol Clin, 2019,7(3):160-166. doi: 10.1016/j.eimc.2018.04.012.
doi: 10.1016/j.eimc.2018.04.012 |
[13] |
Yang M, Huh HJ, Kwon HJ, et al. Comparative evaluation of the AdvanSure Mycobacteria GenoBlot assay and the GenoType Mycobacterium CM/AS assay for the identification of non-tuberculous mycobacteria. J Med Microbiol, 2016,65(12):1422-1428. doi: 10.1099/jmm.0.000376.
doi: 10.1099/jmm.0.000376 URL |
[14] |
Ramis IB, Cnockaert M, Von Groll A, et al. Evaluation of the Speed-Oligo Mycobacteria assay for the identification of nontuberculous mycobacteria. J Med Microbiol, 2015,64(Pt 3):283-287. doi: 10.1099/jmm.0.000025.
doi: 10.1099/jmm.0.000025 URL |
[15] |
Wang HY, Kim H, Kim S, et al. Evaluation of PCR-reverse blot hybridization assay for the differentiation and identification of Mycobacterium species in liquid cultures. J Appl Microbiol, 2015,118(1):142-151. doi: 10.1111/jam.12670.
doi: 10.1111/jam.12670 URL |
[16] |
Mougari F, Loiseau J, Veziris N, et al. Evaluation of the new GenoType NTM-DR kit for the molecular detection of antimicrobial resistance in non-tuberculous mycobacteria. J Antimicrob Chemother, 2017,72(6):1669-1677. doi: 10.1093/jac/dkx021.
doi: 10.1093/jac/dkx021 URL |
[17] |
Kehrmann J, Kurt N, Rueger K, et al. GenoType NTM-DR for Identifying Mycobacterium abscessus Subspecies and Determining Molecular Resistance. J Clin Microbiol, 2016,54(6):1653-1655. doi: 10.1128/JCM.00147-16.
doi: 10.1128/JCM.00147-16 URL |
[18] |
Fang H, Shangguan Y, Wang H, et al. Multicenter evaluation of the biochip assay for rapid detection of mycobacterial isolates in smear-positive specimens. Int J Infect Dis, 2019,81:46-51. doi: 10.1016/j.ijid.2019.01.036.
doi: 10.1016/j.ijid.2019.01.036 URL |
[19] |
刘佳文, 吕红艳, 丁北川, 等. 129株非结核分枝杆菌采用两种分子检测技术行菌种鉴定的结果分析. 中国防痨杂志, 2019,41(9):999-1004. doi: 10.3969/j.issn.1000-6621.2019.09.
doi: 10.3969/j.issn.1000-6621.2019.09 |
[20] |
程丽平, 张晓岩, 沙巍. 痰标本PCR-反向斑点杂交法对疑似非结核分枝杆菌肺病的诊断价值. 中国防痨杂志, 2018,40(8):834-839. doi: 10.3969/j.issn.1000-6621.2018.08.011.
doi: 10.3969/j.issn.1000-6621.2018.08.011 |
[21] |
Zhang H, Luo M, Zhang K, et al. Species identification and antimicrobial susceptibility testing of non-tuberculous mycobacteria isolated in Chongqing, Southwest China. Epidemiol Infect, 2020,149:e7. doi: 10.1017/S0950268820003088.
doi: 10.1017/S0950268820003088 URL |
[22] | Clinical and Laboratory Standards Institute. Interpretive criteria for identification of bacteria and fungi by DNA target sequencing; approved guideline, CLSI document MM18-A. Wayne(PA):Clinical and Laboratory Standards Institute, 2008. |
[23] |
Park KS, Ki CS, Kang CI, et al. Evaluation of the GenBank, EzTaxon, and BIBI services for molecular identification of clinical blood culture isolates that were unidentifiable or misidentified by conventional methods. J Clin Microbiol, 2012,50(5):1792-1795. doi: 10.1128/JCM.00081-12.
doi: 10.1128/JCM.00081-12 URL |
[24] |
Park HE, Kim S, Shim S, et al. 16S and 23S rRNA Gene Mutation Independent Multidrug Resistance of Non-Tuberculous Mycobacteria Isolated from South Korean Soil. Microorganisms, 2020,8(8):1114. doi: 10.3390/microorganisms8081114.
doi: 10.3390/microorganisms8081114 URL |
[25] |
Jang MA, Koh WJ, Huh HJ, et al. Distribution of nontuberculous mycobacteria by multigene sequence-based typing and clinical significance of isolated strains. J Clin Microbiol, 2014,52(4):1207-1212. doi: 10.1128/JCM.03053-13.
doi: 10.1128/JCM.03053-13 URL |
[26] |
de Zwaan R, van Ingen J, van Soolingen D. Utility of rpoB gene sequencing for identification of nontuberculous mycobacteria in the Netherlands. J Clin Microbiol, 2014,52(7):2544-2551. doi: 10.1128/JCM.00233-14.
doi: 10.1128/JCM.00233-14 URL |
[27] |
Pourahmad F, Adams A, Thompson KD, et al. Identification of aquatic mycobacteria based on sequence analysis of the 16S-23S rRNA internal transcribed spacer region. J Med Microbiol, 2019,68(2):221-229. doi: 10.1099/jmm.0.000891.
doi: 10.1099/jmm.0.000891 |
[28] | Arosio M, Ruggeri M, Buoro S, et al. Rapid Diagnosis of Mycobacterium genavense Disseminated Infection by the Microseq 500: A Case Report in A Two Year Old HIV-Negative Child. Ann Clin Lab Sci, 2016,46(5):549-551. |
[29] |
Matsumoto Y, Kinjo T, Motooka D, et al. Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles. Emerg Microbes Infect, 2019,8(1):1043-1053. doi: 10.1080/22221751.2019.1637702.
doi: 10.1080/22221751.2019.1637702 URL |
[30] |
Slechta ES, Hohmann SL, Simmon K, et al. Internal transcribed spacer region sequence analysis using SmartGene IDNS software for the identification of unusual clinical yeast isolates. Med Mycol, 2012,50(5):458-466. doi: 10.3109/13693786.2011.630683.
doi: 10.3109/13693786.2011.630683 URL |
[31] |
Satilmis S, Ulger Toprak N, Ilgın C, et al. Evaluation of direct 16S rRNA PCR from clinical samples for bacterial detection in normally sterile body sites. J Infect Dev Ctries, 2019,13(11):978-983. doi: 10.3855/jidc.11732.
doi: 10.3855/jidc.11732 URL |
[32] |
Li B, Xu L, Guo Q, et al. GenSeizer: a Multiplex PCR-Based Targeted Gene Sequencing Platform for Rapid and Accurate Identification of Major Mycobacterium Species. J Clin Microbiol, 2021,59(2):e00584-20. doi: 10.1128/JCM.00584-20.
doi: 10.1128/JCM.00584-20 |
[33] |
Dohál M, Porvazník I, Pršo K, et al. Whole-genome sequencing and Mycobacterium tuberculosis: Challenges in sample preparation and sequencing data analysis. Tuberculosis (Edinb), 2020,123:101946. doi: 10.1016/j.tube.2020.101946.
doi: 10.1016/j.tube.2020.101946 URL |
[34] |
Kohl TA, Diel R, Harmsen D, et al. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin Microbiol, 2014,52(7):2479-2486. doi: 10.1128/JCM.00567-14.
doi: 10.1128/JCM.00567-14 URL |
[35] |
Tagini F, Greub G. Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review. Eur J Clin Microbiol Infect Dis, 2017,36(11):2007-2020. doi: 10.1007/s10096-017-3024-6.
doi: 10.1007/s10096-017-3024-6 URL |
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